**Select from HUMSS Strand Subjects 5 to 8.
***Schools must present/offer a range of subjects from which students can choose.
The Academic Research Track (ART) was a program for first, second and third year medical students who considered a research experience as part of their education or career.
ART seminars introduce research concepts, useful in planning a mentored summer or 'year out' research project. Taught in small lunchtime seminars (light lunch included) occur throughout the medical school year. Modules consisting of two to three seminars each cover such topics as mentoring and being mentored, formulating a research question, measurements, data gathering and presentation, obtaining research funding, and writing for publication. The goal is to help students think about science as they plan for a mentored research experience, which is typically taken after the second or third years of medical school.
The ART program administrator is Jene Dupra .
The faculty contact is Candace Gildner .
Antoinette Nguyen
Sumeetha Swaminathan
Baqir Kedwai Project: Determination of the Natural History of Aortic Dissection Tissue Mechanics Using Non-invasive Elastography Mentor: Doran Mix, M.D.
Daniel Lehane Project: Patient-Reported Outcomes for Ruptured Abdominal Aortic Aneurysm Mentor: Karina Newhall, M.D., M.S.
Tori Valachovic Project: Assessing Reproductive Health Care and Perspectives amongst Birthing People with Epilepsy Mentor: Sarah Betstadt, M.D., M.P.H.
Marissa LoCastro Project: Engagement in Advanced Care Planning Among Older Patients with Acute Myeloid Leukemia and Myelodysplastic Syndrome Mentor: Dr. Melissa (Kah Poh) Loh
Caroline Maretz Project: Infectious Keratitis: Epidemiology, Bacterial Virulence and Antimicrobial Resistance Mentor: Dr. Rachel Wozniak
Ching-Wei Pan Project: Molecular Mechanism of GATA1 Mutation Causing Transient Abnormal Myelopoiesis in Down Syndrome Mentor: Dr. Laurie Steiner
Mariah Erlick Project: Assessing Value in the Surgical Episode of Care: A Conceptual Model and Implementation Framework Aligning Patient and Provider Values in Gastrointestinal Oncologic Surgery Mentor: Dr. Larissa Temple
Eleanor Pope Project: Longitudinal Real World Changes in Skin Microbial Ecology in AD Patients Mentor: Dr. Lisa Beck
Kevin Vo Project: Targeting Beta-II Spectrin to Improve CAR-T Cell Therapy Mentor: Dr. Minsoo Kim
Shireen Saxena Project Title: "Sex and Race Differences in Outcomes for Patients with Primary Prevention Implantation of Cardioverter Defibrillators" Mentor: Ilan Goldenberg, M.D.
Racquel Whyte Project Title: "Investigating the Difference in Platelet Phenotypes in Patients with Acute Ischemic Stroke and Large Vessel Occlusion versus Non-Stroke Controls" Mentor: Matthew Bender, M.D.
Fatima Bawany Project Title: “Understanding the Relationship Between Skin Commensal Bacterial and S. aureus Burden in Patients with Atopic Dermatitis” Mentor: Lisa Beck, M.D.
Alejandra Rodriguez Project Title: “The Effects of Growth Hormone and IGF-1 on Retinal Nerve Fiber Layers Following Compression Injury” Mentors: G. Edward Vates, M.D., Ph.D. and David Paul, M.D., M.S.
Victor Wang Project Title: “Examining the Relationship of Cigarette Smoke and the Development of Proliferative Vitreoretinopathy” Mentor: Ajay Kuriyan, M.D., M.S.
John Wilson Project Title: “Envelope-Following Response (EFR) as a Modality for Assessing Cochlear Synaptopathy in the Budgerigar” Mentor: Kenneth Henry, Ph.D.
Timothy Campbell Project Title: Look Like an Expert: Gaze Training in Novices Enhances Rate of Skill Acquisition in a VR Simulated Robotic Suture Task Mentor: Ahmed Ghazi, M.D., M.Sc.
Samuel Tomlinson Project Title: Role of interictal spike activity in planning the resection margins for epilepsy surgery Mentor: Eric Marsh, M.D., Ph.D. at the Children’s Hospital of Philadelphia
Kwanza Warren Project Title: Early Post-surgical Temozolomide Therapy in Patients with High-Grade Gliomas Admitted to Acute Rehabilitation: A Feasibility Study Mentor: Kevin A. Walter, M.D.
Justin Williams Project Title: The Association Between Health Literacy, Health Outcomes, and Medication Adherence in Patients with Multiple Sclerosis Mentors: Jessica Robb, M.D. and Andrew Goodman, M.D.
Asad Arastu Project Title: Association of Financial Toxicity (FT) with Depression, Anxiety, and Quality of Life (QoL) in Older Patients and Caregivers with Advanced Cancer Mentor: Supriya Mohile, M.D., M.S.
Shravani Gangidi Project Title: Heart Rate Variability Among ECG and PPG Signals as predictor of Atrial Fibrillation Recurrence After Electrical Cardioversion Mentor: Jean-Philippe Couderc, Ph.D., M.B.A.
Rachel Park Project Title: Identification of Novel Small Molecules that Prevent Radiation-Induced Capsular Contracture Mentor: Richard Phipps, Ph.D.
Michelle Shankar Project Title: Depression among Urban Teens with Asthma: A Focus for Providers Mentor: Jill Halterman, M.D., M.P.H.
Jennifer Andreozzi Project Title: Geriatric Assessment to Improve Outcomes of Elderly Cancer Patients Mentor:Supriya Mohile, M.D., M.S.
Josef Bartels Project Title: The Context, Structure, and Function of Silence in Doctor-Patient Communication Mentor: Ronald Epstein, M.D.
Jon Black Project Title: How We See It: Life through the Eyes of a Pediatric Cancer Patient Mentor: Nancy Chin, Ph.D., M.P.H.
Jarrod Bogue Project Title: Investigation of the fundamental biochemistry and conformational properties of a specific riboswitch from Neisseria gonorrhoeae Mentor: Joseph Wedekind, Ph.D.
Zachary Borus Project Title: The Impact of Implementing a 'Collaborative Problem Solving' Approach to Care on an Inpatient Child Psychiatry Unit Mentor: David Garrison, M.D.
Matthew Brown Project Title: Molecular, Cellular, and Tissue Abnormalities Leading to Impaired Fracture Healing in C57BL/6J Marine Model of Type II Diabetes Mentor: Regis O'Keefe, M.D., Ph.D.
Pedro Calderon-Artero Project Title: The Effects of Potent Inflammation Resolving Lipid Mediators on Platelet Function in Healthy and Diabetic Blood Mentor: Robert Block, M.D., M.P.H., F.A.C.P.
Amanda Carpenter Project Title: Aldo-keto reductase (AKR1C3) Role in Basal & Squamous Cell Skin Cancer Diabetic Blood Mentor: Alice Pentland, M.D.
Jennifer Cialone Project Title: A Phase II, Randomized, Placebo Controlled Trial of the Safety & Tolerability of Mycophenolate (CellCept) in Children with Juvenile Neuronal Ceroid Lipofuscinosis (JNCL) Mentor: Jonathan Mink, M.D., Ph.D.
Ian DeAndrea-Lazarus Project Title: Early Life Lead Exposure and Executive Functions Using the Stroop Day-Night Task Mentor: Todd Jusko, Ph.D.
Thomas Fugate Project Title: Detecting LVH by ECG in African Americans, Jackson Heart Study Mentor: Thomas Pearson, M.D., M.P.H., Ph.D.
Robert Fulton Project Title: Resolvins as Novel Regulators of Alveolar Lung Epithelial Cell Inflammatory Responses Mentor: Patricia Sime, M.D.
Michael Geary Project Title: Modulation of the prostanoid receptor EP4 to reduce scarring during flexor tendon healing Mentor: Regis O'Keefe, Ph.D.
Trevor Hansen Project Title: Thy1 Expression as a Marker and Therapeutic Target for Scar Formation in Capsular Contracture following Reconstruction Mammoplasty Mentor: Richard Phipps, Ph.D.
Christopher Hogan Project Title: Mechanisms for Protecting Human Lung Fibroblasts from Cigarette Smoke-Induced Cell Death: Implications for COPD Mentor: Patricia Sime, M.D.
Jing-Li Huang Project Title: Autophagy in Pancreatic Ductal Adenocarcinoma Mentor: Aram Hezel, M.D.
Brian Jenssen Project Title: Dissemination of Best Practices to Promote Smoke Free Homes Mentor: Jonathan Klein, M.D., M.P.H.
Evan Katzel Project Title: The impact of Smad3 loss of function on TGF-beta signaling and the resultant scarring and adhesion formation during tendon healing Mentor: Regis O'Keefe, M.D., Ph.D.
Angel Kirkham Project Title: Belize: A Case Study of a Community Mental Health Program in a Developing Nation Mentor: Nancy Chin, Ph.D., M.P.H.
Ryan Koehler Project Title: Development and Validation of the Arthroscopic Surgery Skill Evaluation Tool (ASSET) Mentor: Gregg Nicandri, M.D.
Sirish Kondabolu Project Title: Development of siRNA to Prevent Scar Formation in Tendon Repair Mentor: Regis O'Keefe, M.D., Ph.D.
Ajay Kuriyan Project Title: Inhibition of corneal fibroblast differentiation to scar forming cells Mentor: Richard Phipps, Ph.D.
Chase Kwon Project Title: A Systems Biology Approach to Identify Determinants of Staphylococcus Mentor: Lisa Beck, M.D.
Erika Levy Project Title: Treatment of Anxiety and Obsessive Compulsive Behaviors in Tourette Syndrome Mentor: Jonathan Mink, M.D., Ph.D.
Judy Liu Project Title: Mutation specific risk stratification of Long QT Syndrome type 3 via measure of evolutionary conservation of amino acids expressed by the SCN5A gene Mentor: Arthur Moss, M.D.
Jinno (Tony) Magno Project Title: Increased Sensitivity of Poor-Prognosis Human MLL-Rearranged Acute Lymphoblastic Leukemia to Proteasome Inhibition (Bortezomib) in Vitro Mentor: Jessica Shand, M.D.
Kelly Makino Project Title: Advance Care Planning in Early Dementia Study Mentor: Anton Porsteinsson, M.D.
Andrew Marky Project Title: Activated Protein C is Neuroprotective and Mediates New Blood Vessel Formation and Neurogenesis after Controlled Cortical Impact Mentor: Berislav Zlokovic, M.D., Ph.D.
Alexi Matousek Project Title: The Molecular Pathogenesis of Barrett's Esophagus Mentor: Jeffrey Peters, M.D.
Ron Menorca Project Title: Determining EPO's role in accelerating functional recovery of meme in a mouse chronic neuropathy model Mentor: John Elfar, M.D.
Doran Mix Project Title: Computer Assisted Surgery Tool for Hemodialysis Fistulas (CAST-HDF) Mentor: Ankur Chandra, M.D.
Aimee Morris Project Title: Clinical Characteristics, Musical Variables, and Pathophysiology of Focal Embouchure Dystonia: A Disabling Disorder of Musicians Mentor: Jonathan Mink, M.D., Ph.D.
Gregory Ouellet Project Title: Effect of Sex Hormones on Clinical Course of Patients with Congenital Long QT Syndrome Mentor: Arthur Moss, M.D.
Allison Panzer Project Title: Breastfeeding and Health Outcomes in Low and Very Low Birth Weight Infants at 9 Months of Age. Mentor: Cynthia Howard, M.D., M.P.H.
David Paul Project Title: Using DTI to measure changes in occipital lobe white matter after decompression of the optic chiasm Mentors: Brad Mahon, M.D. and Edward Vates, M.D., Ph.D.
Salvador Peña Project Title: Do Astrocytes Contribute to the Exceptionally High Computational Power of the Human Brain? Mentor: Maiken Nedergaard, M.D., DMSc
Clifford Pierre Project Title: The Role of Altered Cerebrospinal Fluid Dynamics after Brain Surgery Mentor: Maiken Nedergaard, M.D., DMSc
Daniel Platt Project Title: Phenotypic Variability in and Treatment of Episodic Ataxia Type 1 Mentor: Robert Griggs, M.D.
Michael Prucha Project Title: Healthcare Worker's Role in Tobacco Control in the Dominican Republic Mentor: Deborah Ossip, Ph.D.
Yaoli Pu Project Title: P75 Neurotrophin Receptor Signaling and Trafficking Mentor: Nina Schor, M.D., Ph.D.
Izad-Yar Daniel Rasheed Project Title: The Kindling Model of Epilepsy and Wavelet-Based Seizure Detection Methods Mentor: David Pinto
Jeffrey Reed Project Title: The Effects of Erythropoietin on Healthy Bone Mentor: John Elfar, M.D.
Kyle Rodenbach Project Title: Crystatin-C-based renal reserve in children with history of hemolytic uremic syndrome-associated acute kidney injury Mentor: George Schwartz, M.D.
Lauren Roussel Project Title: Evaluating Upper Extremity Function Following Mastectomy in Reconstructed and Non-Reconstructed Women with Breast Cancer
Elizabeth Saionz Project Title: Post-concussion progesterone decline in female athletes Mentor: Jeffrey Bazarian, M.D., M.P.H.
Glenn Schneider Project Title: Inner Ear Gene Therapy Steps to Treat Age-Related Hearing Loss Mentor: Robert Frisina, Ph.D.
Jordan Schramm Project Title: Maternal iron-deficiency and its impacts on auditory temporal processing and myelination in the offspring – translation of animal models into the human system Mentor: Anne Luebke, Ph.D.
Erika Snow Project Title: The Role of E-cigarettes as a Barrier to Smoking Cessation Mentor: Scott McIntosh, Ph.D.
Melissa Squires Project Title: Analysis of Inpatient Data on Patients with Intellectual and Developmental Disabilities at Strong Memorial Hospital Mentor: Stephen Sulkes, M.D.
Laurel Stevens Project Title: Role of Plexin B1 receptor in Melanoma Tumor Progression Mentor: Glynis Scott, M.D.
Brandon Stein Project Title: The Relationship Between Subconcussive Head Trauma and Markers of Brain Injury Mentor: Jeff Bazarian, M.D., M.P.H.
Leigh Sundem Project Title: Erythropoietin for Compression Neuropathy: Preclinical Efficacy and Cellular Site of Action Mentor: John Elfar, M.D.
Otto Thomas Project Title: Characteristics, frequency, and implications of extranodal non-Hodgkin's lymphoma Mentor: Louis Constine, M.D.
Heidi Thompson Project Title: Research into Health Care in the Deaf Population Mentor: Steven Barnett, M.D.
Lindsay Wahl Project Title: One Protein, Multiple Functions: The Role of Tissue Transglutaminase in Pulmonary Fibrosis Mentor: Patricia Sime, M.D.
Joanna Walker Project Title: Central Venous Catheter Thrombosis in Children Mentor: Norma Lerner, M.D.
Andrew Walters Project Title: Identification and Deployment of a Novel Drug to Enhance Cardiac Ischemic Preconditioning Mentor: Paul Brookes, Ph.D.
Adam Weis Project Title: Corneal Wound Healing and Ocular Optics After Descemet's Stripping Endothelial Keratoplasty (DSEK) Mentor: Holly Hindman, M.D.
Sam Weisenthal Project Title: Predicting Acute Kidney Injury in Re-Hospitalized Patients Mentor: Martin Zand, M.D., Ph.D.
Pamela White Project Title: Evaluating the Impact of eRecord on Nursing Practice and Patient Outcomes Mentors: Gail Ingersoll, Ed.D., R.N., FAAN, FNAP
Paul Youn Project Title: Effect of Total Body Irradiation and Pre-Transplant Pulmonary Status on Non-Relapse Mortality after Hematopoietic Stem Cell Transplant Mentor: Louis Constine, M.D.
Christine Zanghi Project Title: Anticoagulation in the era of Heparin Induced Thrombocytopenia: Combination Therapy with Bivalirudin and Fondaparinux Versus Conventional Heparin During Cardiopulmonary Bypass Mentor: Michael Eaton, M.D.
Youngsun Cho Project Title: Sources of Dopamine Input to the Amygdala-an Anatomic and Neurochemical Focus of Mood Disorders Mentor: Julie Fudge, M.D.
Katherine Eisenberg Project Title: Lead Exposure in Refugee Children Mentor: Edwin Van Wijngaarden, Ph.D.
Laura Fornarola Project Title: Determining the role of the prolyl isomerase Pin1 in neuronal programmed cell death Mentor: Robert Freeman, Ph.D.
Natalia Golub Project Title: Longitudinal Health Outcomes in Former Refugees Mentor: Diana Fernandez, M.D., M.P.H., Ph.D.
Michael Jacob Project Title: Cognitive Influences on Perception: Studies in the neurophysiology of human aging and single cell dynamics Mentor: Charles Duffy, M.D.
Susan Lee Project Title: Neural basis of audiovisual integration during language comprehension in autism Mentor: Loisa Bennetto, Ph.D.
Kevin Makino Project Title: An Exploration of the Role of Public Health Insurance in Moderating the Effects of Low Family Income on Children's Educational Success Mentor: Bruce Friedman, Ph.D.
Kofi Mensah Project Title: Myelopoiesis in Erosive vs. Non-erosive Inflammatory Arthritis Mentor: Edward Schwarz, Ph.D.
Phillip Rappold Project Title: The Therapeutic Potential of Targeting Mitochondrial Fission/Fusion Pathways in Parkinson's Disease Mentor: Kim Tieu, Ph.D.
Christopher Richardson Project Title: B-Cell Tolerance and Immunology Mentor: Ignacio Sanz, M.D.
Adam Simning Project Title: Mental Illness among Older Adult Public Housing Residents Mentor: Edwin VanWijngaarden, Ph.D.
Mercedes Szpunar Project Title: The Effects of Stress on Breast Cancer: Beta-Adrenergic Receptor Stimulation of Cell Lines In Vitro and In Vivo Mentor: Edward Brown
Helen Wei Project Title: Astrocyte regulation of the cerebral microcirculation Mentors: Maiken Nedergaard, M.D., DM.Sc. and Edward Vates, M.D., Ph.D.
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Open Access
Peer-reviewed
Research Article
Roles Methodology, Software, Validation, Writing – original draft, Writing – review & editing
Affiliation Superfund Research Center, University of Kentucky, Lexington, KY, United States of America
Roles Conceptualization, Methodology, Writing – review & editing
Affiliations Superfund Research Center, University of Kentucky, Lexington, KY, United States of America, Department of Computer Science (Data Science Program), University of Kentucky, Lexington, KY, United States of America, Markey Cancer Center, University of Kentucky, Lexington, KY, United States of America
Roles Conceptualization, Funding acquisition, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing
* E-mail: [email protected]
Affiliations Superfund Research Center, University of Kentucky, Lexington, KY, United States of America, Markey Cancer Center, University of Kentucky, Lexington, KY, United States of America, Department of Molecular and Cellular Biochemistry, University of Kentucky, Lexington, KY, United States of America, Institute for Biomedical Informatics, University of Kentucky, Lexington, KY, United States of America, Center for Clinical and Translational Science, University of Kentucky, Lexington, KY, United States of America
In recent years, United States federal funding agencies, including the National Institutes of Health (NIH) and the National Science Foundation (NSF), have implemented public access policies to make research supported by funding from these federal agencies freely available to the public. Enforcement is primarily through annual and final reports submitted to these funding agencies, where all peer-reviewed publications must be registered through the appropriate mechanism as required by the specific federal funding agency. Unreported and/or incorrectly reported papers can result in delayed acceptance of annual and final reports and even funding delays for current and new research grants. So, it’s important to make sure every peer-reviewed publication is reported properly and in a timely manner. For large collaborative research efforts, the tracking and proper registration of peer-reviewed publications along with generation of accurate annual and final reports can create a large administrative burden. With large collaborative teams, it is easy for these administrative tasks to be overlooked, forgotten, or lost in the shuffle. In order to help with this reporting burden, we have developed the Academic Tracker software package, implemented in the Python 3 programming language and supporting Linux, Windows, and Mac operating systems. Academic Tracker helps with publication tracking and reporting by comprehensively searching major peer-reviewed publication tracking web portals, including PubMed, Crossref, ORCID, and Google Scholar, given a list of authors. Academic Tracker provides highly customizable reporting templates so information about the resulting publications is easily transformed into appropriate formats for tracking and reporting purposes. The source code and extensive documentation is hosted on GitHub ( https://moseleybioinformaticslab.github.io/academic_tracker/ ) and is also available on the Python Package Index ( https://pypi.org/project/academic_tracker ) for easy installation.
Citation: Thompson PT, Powell CD, Moseley HNB (2022) Academic Tracker: Software for tracking and reporting publications associated with authors and grants. PLoS ONE 17(11): e0277834. https://doi.org/10.1371/journal.pone.0277834
Editor: Yuji Zhang, University of Maryland Baltimore, UNITED STATES
Received: April 1, 2022; Accepted: November 3, 2022; Published: November 18, 2022
Copyright: © 2022 Thompson et al. This is an open access article distributed under the terms of the Creative Commons Attribution License , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Data Availability: All relevant data are located at: https://doi.org/10.6084/m9.figshare.19412165 .
Funding: This work was supported in part by grants NSF 2020026 (PI Moseley - HNBM), NIH P42 ES007380 (PI Pennell; co-I HNBM) via the Data Management and Analysis Core (DMAC), and NIH U54 TR001998-05A1 (PI Kern; co-I HNBM). There was no additional external funding received for this study. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing interests: The authors have declared that no competing interests exist.
Since 2008, the United States government has passed laws and issued directives to promote public access to peer-reviewed publications resulting from federal funding. These requirements started with Division G, Title II Section 218 of the Public Law (PL) 110–161 also known as the Consolidated Appropriations Act of 2008 [ 1 ], which directed the National Institutes for Health (NIH) to require all peer-reviewed publications supported by NIH funds to be electronically submitted to PubMed [ 2 ] within 12 months of the official date of publication [ 3 ]. Second in 2013, the White House Office of Science & Technology Policy (OSTP) mandated that all federal agencies with research and development budgets over $100 million to develop public access plans for research publications and data resulting from grants provided by these federal agencies [ 4 ]. Shortly thereafter in 2014, the US Congress passed the FY 2014 Omnibus Appropriations Act [ 5 ], which required federal agencies under Labor, Health and Human Services, and Education with research budgets of $100 million or more to provide public online access to peer-reviewed publications within 12 months of the official data of publication [ 6 ]. To comply with federal law, both NIH and NSF have implemented public access policies to make research supported by funding from these federal agencies freely available to the public. The enforcement of these policies typically occurs during the submission of annual and final reporting process for funded grants from NIH and NSF. In these reports, all peer-reviewed publications must be registered through the required mechanism by the specific federal funding agency. For NIH, peer-reviewed publications must be registered with PubMed Central and have a PubMed Central ID (PMCID). For NSF, peer-reviewed publications must be submitted to the NSF Public Access Repository (NSF-PAR) via Research.gov in the form of an archival PDF (PDF/A) [ 7 ]. Unreported and/or incorrectly reported papers can result in delayed acceptance of annual and final reports and funding delays for current and new research grants. Therefore, timely reporting of every peer-reviewed publication is required. For large collaborative research efforts involving large research teams or even multiple research teams, the tracking and proper registration of peer-reviewed publications along with generation of accurate annual and final reports can create a large administrative burden. With large collaborative teams, it is easy for these administrative tasks to be overlooked, forgotten, or lost in the shuffle.
In an effort to help researchers and their minders stay up-to-date with the reporting of peer-reviewed publications, we created the Academic Tracker software package. Written in the Python 3 programming language, Academic Tracker comprehensively searches major peer-reviewed publication tracking web portals, gathering relevant publications and useful tracking characteristics, for example, an indication of whether the publication has been reported to the NIH (is on PubMed), needs to be reported (is associated with an NIH grant), or satisfies the NIH’s requirements to have a PMCID. It has the ability to search PubMed [ 2 ], ORCID [ 8 ], Google Scholar [ 9 ], and Crossref [ 10 ], given a list of authors and/or author IDs. Academic Tracker provides highly customizable reporting templates so information about the resulting publications is easily transformed into appropriate formats for tracking and reporting purposes.
ORCID (Open Researcher and Contributor ID) is a non-profit organization dedicated to uniquely identifying individuals who participate in research [ 8 ]. Once an author is registered, ORCID provides a unique ID that can be used to associate an author with their publications. These associations can be easily accessed from the ORCID website or through their application programming interface (API). Google Scholar is a search engine for scholarly literature with similar API search facilities to ORCID [ 9 ]. Authors can create profiles on Google Scholar, which Google Scholar uses to automatically associate publications with. Crossref is a non-profit association with both commercial and non-profit publisher members with a primary purpose of enabling cross-publishing citation linking [ 10 ]. Crossref’s stated goal is to make “research objects easy to find, cite, link, assess, and reuse.” For the purposes of Academic Tracker, Crossref serves as a database with an easily accessible API for finding relevant publications.
Academic Tracker has three main use-cases and one supportive use-case. The first main use-case searches the aforementioned web portals for publications, given a list of authors. The second main use-case searches PubMed and Crossref for publication information, given a list of publication citations. Neither ORDID nor Google Scholar can be searched for specific publication information directly. ORCID is organized around author profiles and not publications themselves and does not provide a search option by publication characteristics. Google Scholar cannot be searched by specific publication characteristics, because Google Scholar has limited the repetitive programmatic use of their web service in this way. However, Google Scholar does allow repetitive programmatic search by author profile ID. The third main use-case finds collaborators given a list of authors. This is similar to the first use-case, but focuses on compiling the co-authors from the publications rather than the publications themselves. The fourth supportive use-case searches ORCID or Google Scholar for authors’ unique IDs for these sources, given a list of authors.
The main output from the three main use-cases is a Javascript Object Notation (JSON) file containing information about each publication found. Other outputs vary on user settings. Customizable summary and project reports can be created with an option of emailing them as attachments. The collaborator report of the third use-case is also customizable. All emails are also copied into a JSON file. A configuration JSON file is needed as part of the input to Academic Tracker and the fourth supportive use-case will update this file with the information found during the search. A use-case diagram for Academic Tracker is shown in Fig 1 .
The first and third use-cases, publication search and collaborator search, are illustrated via the “Publication Search by Author” option. The second use-case, publication information, is illustrated via the “Publication Search by Reference” option. The supporting use-case, ORCID ID and Google Scholar ID searches, are illustrated by the “Unique ID Search” option.
https://doi.org/10.1371/journal.pone.0277834.g001
Academic Tracker leverages many third-party Python libraries and packages to accomplish its major tasks. Academic Tracker uses the docopt library to implement a command line interface (CLI) from a Python docstring description. Next, Academic Tracker uses the jsonschema library to validate user JSON input against an expected schema, which is also in JSON format. JSON Schema is an independently developed vocabulary or framework created for the purpose of validating and annotating JSON. Other developers have implemented the vocabulary in several languages, and the jsonschema library is the Python language implementation. The specific schema used in Academic Tracker are in the Validation_Schemas directory of the supplemental materials. Academic Tracker also uses four different packages to query data sources for publications. Specifically, Academic Tracker uses the pymed, habanero, orcid, and scholarly libraries to query PubMed, Crossref, ORCID, and Google Scholar, respectively. For the second use-case, Academic Tracker uses the requests library to make HTTP requests and the beautifulsoup4 library to parse HTML in the pulled web pages given as the reference file. Next, Academic Tracker uses the fuzzywuzzy library to fuzzy match publication titles, which is necessary because publications do not have a universal unique identifier. For general file input/output, Academic Tracker uses several packages, including: i) the python-docx library to read Microsoft Word files, specifically for the reference file input; ii) the pandas library to read and write tabular data, specifically to read in author data and write out reports; and iii) indirectly the openpyxl library, which is used by pandas to write Excel files. In order to comprehensively compare publication information across different runs to see if any information has changed, Academic Tracker uses the deepdiff library. A list of packages and their versions are in Table 1 .
https://doi.org/10.1371/journal.pone.0277834.t001
Although there are 3 main use-cases and 1 supportive use-case, Academic Tracker has 2 main commands and 6 supporting commands ( Table 2 ). The first and third main use-cases are handled by the author_search command, while the second main use-case is handled by the reference_search command. The supportive use-case is handled by the find_ORCID and find_Google_Scholar commands. The remaining four commands help users experiment with the tokenization and reporting systems in Academic Tracker and make it a little easier to convert author information into JSON format. The commands are listed in Table 2 . The input and output files for each command are further described in Table 3 .
https://doi.org/10.1371/journal.pone.0277834.t002
https://doi.org/10.1371/journal.pone.0277834.t003
Although Academic Tracker is primarily designed to be a command line tool, it does provide an equivalent API, which can be utilized if so desired. The CLI and highest-level API for each command are implemented in the __main__.py file, but other submodules break down the steps into smaller pieces. Utilizing the API, reference_search and author_search are almost completely separated into their own submodules. The athr_srch_modularized.py submodule compartmentalizes the steps of author_search, while the athr_srch_webio.py and athr_srch_emails_and_reports.py submodules contain the functions to interface with the internet and generate reports and emails respectively. reference_search is organized the same way with the ref_srch_modularized.py, ref_srch_webio.py, and ref_srch_emails_and_reports.py submodules. The user_input_checking.py submodule contains the functions to validate user input for errors, and the tracker_schema.py submodule works in tandem with it to store the JSON schema being used for validation. The fileio.py submodule contains all the functions for reading and writing files. The webio.py submodule contains functions to interface with the internet that are more general purpose or common to multiple commands. It is where the functions to interface with the internet for find_ORCID and find_Google_Scholar are. The helper_functions.py submodule contains functions with common operations across all commands that don’t classify well into any other submodule, such as regex operations and data transformation. The citation_parsing.py submodule contains all the functions used to tokenize the reference sources for reference_search. Table 4 lists the submodules of Academic Tracker, and Fig 2 shows a module diagram.
Submodule and module dependencies are illustrated by connecting lines, except for helper_functions which is utilized by most other submodules.
https://doi.org/10.1371/journal.pone.0277834.g002
https://doi.org/10.1371/journal.pone.0277834.t004
The Academic Tracker package was originally developed in a Linux operating system (OS) environment, but has been directly tested on Linux, Windows, and MacOS operating systems. All use-cases have been tested on these operating systems; however, Academic Tracker relies on sendmail or an emulator being installed and configured on the machine for its email functionality. In addition, each submodule includes unit-tests that test all critical functions of the submodule. Every function in every module is tested to make sure it gives the expected output when it should and errors when it should. All requests to web portals are replaced with mock data. The user_input_checking.py submodule has the largest number of tests, since it tests several error states for each element of the input JSON files. Every command line option is tested, for example, silent and not searching ORCID options. Various ways of creating reports are also tested, such as creating a tabular report versus a text report, Excel versus CSV format, and renaming the report from the default name. Several different citation styles and sources are also tested to make sure they are tokenized correctly, such as MEDLINE, a MyNCBI bibliography URL, and an NSF Award page.
Academic Tracker can be utilized in many different ways and was designed with a great deal of flexibility, anticipating users’ desire to use it in unpredictable ways. However, the three main and one supportive use-case are presented here. Note that the figures here are general examples with mostly dummy data. There are full examples with real data and run commands in the supplemental materials (Example_Runs subdirectory). The first main use-case involves searching for publications given author information. Fig 3 shows an example input configuration JSON file, the command line for its execution, the API execution equivalent, and the resulting output files. Fig 4 shows the contents of these resulting output files. Authors without unique ORCID or Google Scholar IDs are identified by matching first name, last name, and at least one affiliation.
Example configuration file, command-line execution, API execution, and file output of the author_search for publications use-case shown.
https://doi.org/10.1371/journal.pone.0277834.g003
Example JSON publications output and plain-text summary report from the author_search for publications use-case shown.
https://doi.org/10.1371/journal.pone.0277834.g004
The second main use-case involves looking for publications based on a given reference. Fig 5 shows an example input configuration JSON file, the command line for its execution, the API execution equivalent, and the resulting output files. Figs 6 and 7 show the contents of the resulting output files.
Example configuration file, reference file, command-line execution, API execution, and file output of the reference_search use-case shown.
https://doi.org/10.1371/journal.pone.0277834.g005
https://doi.org/10.1371/journal.pone.0277834.g006
https://doi.org/10.1371/journal.pone.0277834.g007
The third use-case is basically identical to the first, but a collaborator report attribute needs to be added to an author. Fig 8 is essentially the same as Fig 3 , but with a collaborator report attribute added to Author1 and the report in the output directory. Fig 4 already shows the contents of the publications JSON and summary report. Table 5 shows the contents of the resulting collaborator report table.
Example configuration file, command-line execution, API execution, and file output of the author_search for collaborators use-case shown.
https://doi.org/10.1371/journal.pone.0277834.g008
https://doi.org/10.1371/journal.pone.0277834.t005
The supportive use-case is broken into 2 commands: find_ORCID for finding ORCID IDs and find_Google_Scholar for finding Google Scholar IDs. Fig 9 shows an example input configuration JSON, how to accomplish this using the command line and API, and the resulting output files for finding ORCID IDs. Fig 10 shows the contents of the resulting configuration JSON file. Figs 11 and 12 are the same as Figs 9 and 10 but for finding Google Scholar IDs.
Example configuration file, command-line execution, API execution, and file output of the author ORCID ID search use-case shown.
https://doi.org/10.1371/journal.pone.0277834.g009
https://doi.org/10.1371/journal.pone.0277834.g010
Example configuration file, command-line execution, API execution, and file output of the author Google Scholar ID search use-case shown.
https://doi.org/10.1371/journal.pone.0277834.g011
https://doi.org/10.1371/journal.pone.0277834.g012
Academic Tracker is a useful tool for querying major scientific publication web portals for publications, given a list of authors or references and for creating highly customizable reports from the list of publications found. The software package provides assistance in repetitive tracking and reporting of peer-reviewed publications associated with specific authors, projects, and grants. Specifically, the JSON configuration file supports batch execution, directing Academic Tracker to perform multiple related author searches and report generations. The JSON configuration file has many optional parameters to customize searching and report generation, including a cutoff_year for searching. Academic Tracker is also designed for repetitive tracking by comparing current search results to prior search results to limit reporting to changes in publications detected and in publication attributes. Academic Tracker also provides facilities for generating lists of co-author collaborators, which has several uses in grant proposal submission. But given the number of major use-cases and versality of the software, there is some intellectual overhead required to initially setup the JSON configuration file and customize reports. Additional supportive commands are included to make learning and troubleshooting the tool easier for new users. Also, there is extensive documentation available to help with the learning curve: https://moseleybioinformaticslab.github.io/academic_tracker/
In addition, when installed via the Python package management system pip, a console script “academic_tracker” is created automatically for the user, providing easy access to the CLI.
While the package accesses multiple major peer-reviewed publication tracking web portals, it is fundamentally limited to the information provided by these web portals and must assume the information provided is accurate. One possibility is to download a PDF of the publication itself for analysis. However, this is pragmatically infeasible, since there is wide variation in how journals organize the splash page of their publications. One way to alleviate this issue is for journals to adopt a DOI extension like “.pdf” which would link directly to the PDF version of the publication, if the PDF version is accessible. This is similar to the versioning “.v#” DOI extension that FigShare uses to provide access each version of a public FigShare repository. If a practical way to directly access the PDF is implemented either by journals or the publication tracking web portals, we would extend Academic Tracker to utilize it. Still in its current implementation, we believe Academic Tracker can significantly reduce the stress and hassle of reporting publications to federal funding agencies, reducing the chance for accidental non-compliance and resulting delay in funding.
We also thank Jennifer Moore for feedback during the development of the report generation capabilities.
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Previous research shows academic track schools are more successful than non-academic track schools in teaching mathematics, reading and foreign languages. Reasons include a more favorable student composition and higher instructional quality. However, there is less evidence that between track differences are even large enough to differentially ...
The Tukey's post-hoc test revealed that students who selected an academic track at an all-academic school had higher academic self-concept in their last year of compulsory school than academic students in multilateral schools (MD = 0.22, SE = 0.05, p < .001), with a small to medium difference in terms of Cohen's d (d s = 0.
In light of the scarce amount of research on relationships between school-track-related stereotype awareness and academic outcomes, it seemed most appropriate to rely on theoretical considerations ...
Future research could substantiate that these track differences in teachers' behaviors lead to differences across time in the academic achievement and goals of early adolescents. Research suggests that students in standard classes are aware that teachers demonstrate more positive interactions with students in advanced classes ( Gilbert ...
academically tended to choose the academic track, while those who Keywords: Senior high school, Track preference, Determinants, G10 students. ... this research was grade 10 students; both male and female adolescents aged 15-17 years old, enrolled in the school year 2021-2022. Two schools from private and four schools from the public were
Academic tracking has long been a subject of debate due to its potential impact on educational equity, with students who are tracked highly receiving a higher quality education in comparison to students tracked lowly. These disparities in education quality may be affecting students' outcomes, as it has been demonstrated that the short-term academic outcomes of students, such as their grades ...
This study aims to assess some selected factors associated with of preferences of senior high school track. that are commonly adopted by the Grade 10 students of a secondary natio nal high school ...
Previous research shows academic track schools are more successful than non-academic track schools in teaching mathematics, reading and foreign languages. Reasons include a more favorable student ...
Academic tracking is a common feature of school organization, but it produces inequalities in student outcomes. ... Same school, separate worlds: A sociocultural study of identity, resistance, and negotiation in a rural, lower track science classroom. Journal of Research in Science Teaching, 38, 574-598. Crossref. Web of Science. Google Scholar.
CORRELATES OF STUDENTS PREFERENCE ON TVL TRACK AND ACADEMIC ENGAGEMENT. December 2018. Thesis for: BACHELOR OF SCIENCE IN TECHNOLOGY TEACHER EDUCATION MAJOR IN INDUSTRIAL TECHNOLOGY. Advisor: SIR ...
There are many influences that affect the preferences of grade 10 students in choosing a track to proceed to senior high school. Likewise, this study aims to identify influence of preference of a Senior High School track that is commonly encountered by the Grade 10 students in terms of Gender, Socio-Economic Status, Average academic grades, nature of parent's occupation; and, strand and the ...
There are many influences that affect the preferences of grade 10 students in choosing a track to proceed to senior high school. Likewise, this study aims to identify influence of preference of a Senior High School track that is commonly encountered by the Grade 10 students in terms of Gender, Socio-Economic Status, Average academic grades, nature of parent's occupation; and, strand and the ...
The Research Whisperer is dedicated to the topic of doing research in academia. We talk about finding funding, research culture, and building academic track-records. This blog is managed by Tseen Khoo and Jonathan O'Donnell.
The data were collected from Grade 12 Senior High School Academic Track students with the use of the English Speaking Attitude Questionnaire (ESAQ). ... especially attitude, should be considered in language research. Senior High School students are expected to have better English language proficiency, especially their oral communication ability
Today, they need proven track records that include conference presentations and peer-reviewed publications. They cannot wait for graduation to start building their Curriculum Vitae (CV), as competition for grants, post-doctorate positions, and jobs require that students are already active in their fields.
The goals of the Longitudinal Academic Tracks are to promote intellectual curiosity, appreciation of scholarly inquiry, inter-professional collaboration, and cura personalis. Longitudinal Academic Tracks currently offered in the School of Medicine: Diversity, Equity, & Inclusion in Medicine Track. Environmental Health and Medicine Track.
K to 12 ›. Academic Track. Sample Scheduling of Subjects Accountancy, Business and Management (ABM) Strand. Sample Scheduling of Subjects. Applied Economics. Business Ethics and Social Responsibility. Fundamentals of Accountancy, Business and Management 1. Fundamentals of Accountancy, Business and Management 2. Business Math.
From social science to computer science, X data can advance research objectives on topics as diverse as the global conversations happening on X. Help us design for your needs by taking part in our academic research panel. Your feedback will help shape our investments that serve the academic research community.
Clinical & Translational Science Institute / Education and Career / Academic Research Track (ART) Academic Research Track (ART) The Academic Research Track (ART) was a program for first, second and third year medical students who considered a research experience as part of their education or career. Jump to:
The data were collected from G rade 12 Senior High School Academic. Track students with the use of the English Speaking Attitude Questionnaire. (ESAQ). R esults show that both HumSS and ABM strand ...
What is a Research Track Record? M. Polonsky Australasian Marketing Journal 16 (2), 2008 67 Commentaries from the Research Network Collaboration Special Session ANZMAC 2006 Introduction1. The evaluation of academic research performance is a difficult question and can be evaluated in a number of different ways.
Academic, Technical-Vocational Livelihood, Sports, and Arts and Design Tracks (Shahani, 2015). Among the strands under the Academic Track is the Humanities and Social Sciences
For large collaborative research efforts, the tracking and proper registration of peer-reviewed publications along with generation of accurate annual and final reports can create a large administrative burden. ... Windows, and Mac operating systems. Academic Tracker helps with publication tracking and reporting by comprehensively searching ...